Juvenile Bypass Survival

Calculates the juvenile rearing survival in the bypasses

surv_juv_bypass(
  max_temp_thresh,
  avg_temp_thresh,
  high_predation,
  ..surv_juv_bypass_int = springRunDSM::params$..surv_juv_bypass_int,
  .avg_temp_thresh = springRunDSM::params$.surv_juv_bypass_avg_temp_thresh,
  .high_predation = springRunDSM::params$.surv_juv_bypass_high_predation,
  .medium = springRunDSM::params$.surv_juv_bypass_medium,
  .large = springRunDSM::params$.surv_juv_bypass_large,
  .floodplain = springRunDSM::params$.surv_juv_bypass_floodplain,
  min_survival_rate = springRunDSM::params$min_survival_rate,
  stochastic
)

Source

IP-117068

Arguments

max_temp_thresh

Variable representing the probability of exceeding the max temp threshold

avg_temp_thresh

Variable representing the probability of exceeding the average temperature

high_predation

Variable representing an indicator for high predation in watershed

..surv_juv_bypass_int

Intercept, source: calibration

.avg_temp_thresh

Coefficient for avg_temp_thresh variable

.high_predation

Coefficient for high_predation variable

.medium

Size related intercept for medium sized fish

.large

Size related intercept for large sized fish

.floodplain

Additional intercept for floodplain rearing benefit

min_survival_rate

Estimated survival rate if temperature threshold is exceeded

stochastic

TRUE FALSE value indicating if model is being run stochastically

Details

See params for details on parameter sources