spring_run_model.RdSpring Run Chinook life cycle model used for CVPIA's Structured Decision Making Process
IP-117068
Model inputs, can be modified to test management actions
The mode to run model in. Can be "seed", "simulate", "calibrate"
The default value is NULL runs the model in seeding mode, returning a 31 by 25 matrix with the first four years of seeded adults. This returned value can be fed into the model again as the value for the seeds argument
Parameters for model and submodels. Defaults to fallRunDSM::.params
TRUE FALSE value indicating if model should be run stochastically. Defaults to FALSE.
spring_run_seeds <- springRunDSM::spring_run_model(mode = "seed")
springRunDSM::spring_run_model(scenario = DSMscenario::scenarios$ONE,
mode = "simulate",
seeds = spring_run_seeds)
#> $spawners
#> 1 2 3 4 5 6 7 8 9 10
#> Upper Sacramento River 24 16 8 10 18 18 14 10 14 8
#> Antelope Creek 46 29 14 18 36 36 29 22 25 16
#> Battle Creek 519 330 169 255 450 419 281 287 326 191
#> Bear Creek 0 0 0 0 0 0 0 0 0 0
#> Big Chico Creek 30 22 14 16 24 24 20 16 20 14
#> Butte Creek 5974 3856 1725 1678 2724 2353 1240 1494 1962 1022
#> Clear Creek 535 345 172 416 813 811 670 828 947 568
#> Cottonwood Creek 24 16 8 10 18 18 14 10 14 8
#> Cow Creek 0 0 0 0 0 0 0 0 0 0
#> Deer Creek 347 213 100 96 152 144 98 78 84 60
#> Elder Creek 0 0 0 0 0 0 0 0 0 0
#> Mill Creek 406 242 100 118 208 177 90 75 82 46
#> Paynes Creek 0 0 0 0 0 0 0 0 0 0
#> Stony Creek 0 0 0 0 0 0 0 0 0 0
#> Thomes Creek 24 16 8 10 18 18 14 10 14 8
#> Upper-mid Sacramento River 0 0 0 0 0 0 0 0 0 0
#> Sutter Bypass 0 0 0 0 0 0 0 0 0 0
#> Bear River 0 0 0 0 0 0 0 0 0 0
#> Feather River 5009 4996 5053 5646 6767 7840 7703 6495 5843 5554
#> Yuba River 739 722 749 870 984 1000 931 939 1038 943
#> Lower-mid Sacramento River 0 0 0 0 0 0 0 0 0 0
#> Yolo Bypass 0 0 0 0 0 0 0 0 0 0
#> American River 0 0 0 0 0 0 0 0 0 0
#> Lower Sacramento River 0 0 0 0 0 0 0 0 0 0
#> Calaveras River 24 16 8 10 18 18 14 10 14 8
#> Cosumnes River 24 16 8 10 18 18 14 10 14 8
#> Mokelumne River 24 16 8 10 18 18 14 10 14 8
#> Merced River 24 16 8 10 18 18 14 10 14 8
#> Stanislaus River 24 16 8 10 18 18 14 10 14 8
#> Tuolumne River 24 16 8 10 18 18 14 10 14 8
#> San Joaquin River 0 0 0 0 0 0 0 0 0 0
#> 11 12 13 14 15 16 17 18 19 20
#> Upper Sacramento River 8 10 8 2 8 10 14 20 18 16
#> Antelope Creek 14 22 14 6 14 22 25 38 36 30
#> Battle Creek 202 330 202 81 187 281 308 445 405 352
#> Bear Creek 0 0 0 0 0 0 0 0 0 0
#> Big Chico Creek 14 16 14 8 14 16 20 26 24 22
#> Butte Creek 936 1636 959 295 803 1215 1209 1458 1056 572
#> Clear Creek 867 1456 857 311 1002 1585 1935 3255 3221 2792
#> Cottonwood Creek 8 10 8 2 8 10 14 20 18 16
#> Cow Creek 0 0 0 0 0 0 0 0 0 0
#> Deer Creek 56 66 54 38 56 68 76 98 88 82
#> Elder Creek 0 0 0 0 0 0 0 0 0 0
#> Mill Creek 40 70 40 12 29 50 62 86 78 68
#> Paynes Creek 0 0 0 0 0 0 0 0 0 0
#> Stony Creek 0 0 0 0 0 0 0 0 0 0
#> Thomes Creek 8 10 8 2 8 10 14 20 18 16
#> Upper-mid Sacramento River 0 0 0 0 0 0 0 0 0 0
#> Sutter Bypass 0 0 0 0 0 0 0 0 0 0
#> Bear River 0 0 0 0 0 0 0 0 0 0
#> Feather River 5188 5095 5051 5034 5114 5230 5581 6151 6366 6419
#> Yuba River 872 923 853 768 906 1073 1142 1346 1412 1442
#> Lower-mid Sacramento River 0 0 0 0 0 0 0 0 0 0
#> Yolo Bypass 0 0 0 0 0 0 0 0 0 0
#> American River 0 0 0 0 0 0 0 0 0 0
#> Lower Sacramento River 0 0 0 0 0 0 0 0 0 0
#> Calaveras River 8 10 8 2 8 10 14 20 18 16
#> Cosumnes River 8 10 8 2 8 10 14 20 18 16
#> Mokelumne River 8 10 8 2 8 10 14 20 18 16
#> Merced River 8 10 8 2 8 10 14 20 18 16
#> Stanislaus River 8 10 8 2 8 10 14 20 18 16
#> Tuolumne River 8 10 8 2 8 10 14 20 18 16
#> San Joaquin River 0 0 0 0 0 0 0 0 0 0
#>
#> $juvenile_biomass
#> 1 2 3 4 5
#> Upper Sacramento River 0.0 628.0 628.0 628.0 628.0
#> Antelope Creek 0.0 1130.4 1130.4 1287.4 1296.5
#> Battle Creek 10401.9 121152.8 176757.5 203589.4 211684.6
#> Bear Creek 0.0 0.0 0.0 0.0 0.0
#> Big Chico Creek 0.0 0.0 0.0 0.0 0.0
#> Butte Creek 62448.0 1499041.8 2090587.3 2300666.3 2337929.0
#> Clear Creek 19969.3 300794.4 445914.1 551453.8 578645.4
#> Cottonwood Creek 0.0 0.0 0.0 0.0 0.0
#> Cow Creek 0.0 0.0 0.0 0.0 0.0
#> Deer Creek 2339.5 68464.7 85880.3 91304.3 92216.2
#> Elder Creek 0.0 0.0 0.0 0.0 0.0
#> Mill Creek 3808.0 67755.2 88277.1 94563.0 96435.5
#> Paynes Creek 0.0 0.0 0.0 0.0 0.0
#> Stony Creek 0.0 0.0 0.0 0.0 0.0
#> Thomes Creek 0.0 0.0 0.0 0.0 0.0
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0
#> Bear River 0.0 0.0 0.0 0.0 0.0
#> Feather River 104542.1 913244.7 1845096.4 3153473.8 3232391.1
#> Yuba River 48004.9 203948.9 357168.4 471240.3 492224.5
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0
#> American River 0.0 0.0 0.0 0.0 0.0
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 0.0 0.0 0.0 0.0 0.0
#> Cosumnes River 0.0 0.0 0.0 0.0 0.0
#> Mokelumne River 0.0 0.0 0.0 0.0 0.0
#> Merced River 0.0 0.0 0.0 0.0 0.0
#> Stanislaus River 0.0 0.0 0.0 0.0 0.0
#> Tuolumne River 0.0 0.0 0.0 0.0 0.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0
#> 6 7 8 9 10
#> Upper Sacramento River 1256.0 1256.0 1256.0 1256.0 1256.0
#> Antelope Creek 1641.9 1641.9 1641.9 1745.2 1745.2
#> Battle Creek 360456.8 363658.6 367504.2 401004.8 405195.4
#> Bear Creek 0.0 0.0 0.0 0.0 0.0
#> Big Chico Creek 0.0 0.0 0.0 0.0 0.0
#> Butte Creek 3227460.2 3235834.7 3258806.2 3443544.7 3463011.5
#> Clear Creek 1108632.1 1125203.2 1149578.4 1328275.3 1349364.9
#> Cottonwood Creek 0.0 0.0 0.0 0.0 0.0
#> Cow Creek 0.0 0.0 0.0 0.0 0.0
#> Deer Creek 115986.9 116508.4 117076.3 119220.5 119656.9
#> Elder Creek 0.0 0.0 0.0 0.0 0.0
#> Mill Creek 128281.0 128986.8 129405.9 135317.5 135853.1
#> Paynes Creek 0.0 0.0 0.0 0.0 0.0
#> Stony Creek 0.0 0.0 0.0 0.0 0.0
#> Thomes Creek 0.0 0.0 0.0 0.0 0.0
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0
#> Bear River 0.0 0.0 0.0 0.0 0.0
#> Feather River 3910494.1 4009591.8 4076757.9 4095215.5 4109809.6
#> Yuba River 740372.3 777402.8 812136.8 881092.5 914653.9
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0
#> American River 0.0 0.0 0.0 0.0 0.0
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 0.0 0.0 0.0 0.0 0.0
#> Cosumnes River 0.0 0.0 0.0 0.0 0.0
#> Mokelumne River 0.0 0.0 0.0 0.0 0.0
#> Merced River 0.0 0.0 0.0 0.0 0.0
#> Stanislaus River 0.0 0.0 0.0 0.0 0.0
#> Tuolumne River 0.0 0.0 0.0 0.0 0.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0
#> 11 12 13 14 15
#> Upper Sacramento River 1256.0 1256.0 1256.0 1256.0 1256.0
#> Antelope Creek 1745.2 1808.0 1808.0 1808.0 1808.0
#> Battle Creek 408209.7 420543.4 479857.6 480537.9 555884.0
#> Bear Creek 0.0 0.0 0.0 0.0 0.0
#> Big Chico Creek 0.0 0.0 0.0 0.0 0.0
#> Butte Creek 3480957.6 3557219.3 3853388.0 3855387.5 4157886.0
#> Clear Creek 1371353.8 1469800.5 1905747.5 1913438.4 2557105.7
#> Cottonwood Creek 0.0 0.0 0.0 0.0 0.0
#> Cow Creek 0.0 0.0 0.0 0.0 0.0
#> Deer Creek 119899.9 120730.4 127603.8 127896.4 136236.5
#> Elder Creek 0.0 0.0 0.0 0.0 0.0
#> Mill Creek 136217.6 137348.9 145337.2 145337.2 155755.6
#> Paynes Creek 0.0 0.0 0.0 0.0 0.0
#> Stony Creek 0.0 0.0 0.0 0.0 0.0
#> Thomes Creek 0.0 0.0 0.0 0.0 0.0
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0
#> Bear River 0.0 0.0 0.0 0.0 0.0
#> Feather River 4125445.8 4151137.8 4272826.7 4326705.8 4922605.4
#> Yuba River 928549.9 956306.1 1233575.9 1258536.1 1544612.2
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0
#> American River 0.0 0.0 0.0 0.0 0.0
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 0.0 0.0 0.0 0.0 0.0
#> Cosumnes River 0.0 0.0 0.0 0.0 0.0
#> Mokelumne River 0.0 0.0 0.0 0.0 0.0
#> Merced River 0.0 0.0 0.0 0.0 0.0
#> Stanislaus River 0.0 0.0 0.0 0.0 0.0
#> Tuolumne River 0.0 0.0 0.0 0.0 0.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0
#> 16 17 18 19 20
#> Upper Sacramento River 1256.0 1256.0 1955.9 2740.9 3400.3
#> Antelope Creek 2162.5 2225.3 2548.4 2862.4 3145.0
#> Battle Creek 641766.5 658244.1 784756.1 917066.0 1021953.7
#> Bear Creek 0.0 0.0 0.0 0.0 0.0
#> Big Chico Creek 0.0 0.0 0.0 0.0 0.0
#> Butte Creek 4414862.7 4459758.2 4711814.3 5033299.7 5193776.8
#> Clear Creek 3503769.1 3687814.5 4800244.5 6098009.6 7171367.8
#> Cottonwood Creek 0.0 0.0 0.0 0.0 0.0
#> Cow Creek 0.0 0.0 0.0 0.0 0.0
#> Deer Creek 143371.1 146857.4 160796.7 175084.6 187959.5
#> Elder Creek 0.0 0.0 0.0 0.0 0.0
#> Mill Creek 165457.7 167100.5 184855.1 203826.6 220891.8
#> Paynes Creek 0.0 0.0 0.0 0.0 0.0
#> Stony Creek 0.0 0.0 0.0 0.0 0.0
#> Thomes Creek 0.0 0.0 0.0 0.0 0.0
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0
#> Bear River 0.0 0.0 0.0 0.0 0.0
#> Feather River 5618501.4 6152425.5 6825257.7 9291537.5 9983634.6
#> Yuba River 1938870.0 2129240.6 2459146.2 2871062.8 3289979.1
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0
#> American River 0.0 0.0 0.0 0.0 0.0
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 0.0 0.0 0.0 0.0 0.0
#> Cosumnes River 0.0 0.0 0.0 0.0 0.0
#> Mokelumne River 0.0 0.0 0.0 0.0 0.0
#> Merced River 0.0 0.0 0.0 0.0 0.0
#> Stanislaus River 0.0 0.0 0.0 502.4 502.4
#> Tuolumne River 0.0 0.0 0.0 0.0 0.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0
#>
#> $proportion_natural
#> 1 2 3 4
#> Upper Sacramento River 0.999995833 0.999993750 0.99998750 0.9999900
#> Antelope Creek 0.999997826 0.999996552 0.99999286 0.9999944
#> Battle Creek 0.951830260 0.924242144 0.85207050 0.9019604
#> Bear Creek 0.000000000 0.000000000 0.00000000 0.0000000
#> Big Chico Creek 0.799997333 0.727269422 0.57142449 0.6249961
#> Butte Creek 0.997321711 0.995850597 0.99072458 0.9904648
#> Clear Creek 0.996261496 0.994202610 0.98837152 0.9951921
#> Cottonwood Creek 0.999995833 0.999993750 0.99998750 0.9999900
#> Cow Creek 0.000000000 0.000000000 0.00000000 0.0000000
#> Deer Creek 0.913544405 0.859154526 0.69999930 0.6874993
#> Elder Creek 0.000000000 0.000000000 0.00000000 0.0000000
#> Mill Creek 0.999999754 0.999999587 0.99999900 0.9999992
#> Paynes Creek 0.000000000 0.000000000 0.00000000 0.0000000
#> Stony Creek 0.000000000 0.000000000 0.00000000 0.0000000
#> Thomes Creek 0.999995833 0.999993750 0.99998750 0.9999900
#> Upper-mid Sacramento River 0.000000000 0.000000000 0.00000000 0.0000000
#> Sutter Bypass 0.000000000 0.000000000 0.00000000 0.0000000
#> Bear River 0.000000000 0.000000000 0.00000000 0.0000000
#> Feather River 0.007187063 0.004603683 0.01583218 0.1191994
#> Yuba River 0.062246270 0.040166199 0.07476635 0.2034483
#> Lower-mid Sacramento River 0.000000000 0.000000000 0.00000000 0.0000000
#> Yolo Bypass 0.000000000 0.000000000 0.00000000 0.0000000
#> American River 0.000000000 0.000000000 0.00000000 0.0000000
#> Lower Sacramento River 0.000000000 0.000000000 0.00000000 0.0000000
#> Calaveras River 0.999995833 0.999993750 0.99998750 0.9999900
#> Cosumnes River 0.999995833 0.999993750 0.99998750 0.9999900
#> Mokelumne River 0.999995833 0.999993750 0.99998750 0.9999900
#> Merced River 0.999995833 0.999993750 0.99998750 0.9999900
#> Stanislaus River 0.999995833 0.999993750 0.99998750 0.9999900
#> Tuolumne River 0.999995833 0.999993750 0.99998750 0.9999900
#> San Joaquin River 0.000000000 0.000000000 0.00000000 0.0000000
#> 5 6 7 8 9
#> Upper Sacramento River 0.9999944 0.9999944 0.9999929 0.9999900 0.9999929
#> Antelope Creek 0.9999972 0.9999972 0.9999966 0.9999955 0.9999960
#> Battle Creek 0.9444442 0.9403339 0.9110317 0.9128917 0.9233126
#> Bear Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Big Chico Creek 0.7499969 0.7499969 0.6999965 0.6249961 0.6999965
#> Butte Creek 0.9941262 0.9932001 0.9870967 0.9892904 0.9918450
#> Clear Creek 0.9975399 0.9975338 0.9970148 0.9975844 0.9978880
#> Cottonwood Creek 0.9999944 0.9999944 0.9999929 0.9999900 0.9999929
#> Cow Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Deer Creek 0.8026311 0.7916661 0.6938768 0.6153838 0.6428564
#> Elder Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Mill Creek 0.9999995 0.9999994 0.9999989 0.9999987 0.9999988
#> Paynes Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Stony Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Thomes Creek 0.9999944 0.9999944 0.9999929 0.9999900 0.9999929
#> Upper-mid Sacramento River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Sutter Bypass 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Bear River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Feather River 0.2651101 0.3656888 0.3544074 0.2343341 0.1488961
#> Yuba River 0.2957317 0.3070000 0.2556391 0.2619808 0.3323699
#> Lower-mid Sacramento River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Yolo Bypass 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> American River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Lower Sacramento River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Calaveras River 0.9999944 0.9999944 0.9999929 0.9999900 0.9999929
#> Cosumnes River 0.9999944 0.9999944 0.9999929 0.9999900 0.9999929
#> Mokelumne River 0.9999944 0.9999944 0.9999929 0.9999900 0.9999929
#> Merced River 0.9999944 0.9999944 0.9999929 0.9999900 0.9999929
#> Stanislaus River 0.9999944 0.9999944 0.9999929 0.9999900 0.9999929
#> Tuolumne River 0.9999944 0.9999944 0.9999929 0.9999900 0.9999929
#> San Joaquin River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> 10 11 12 13
#> Upper Sacramento River 0.9999875 0.99998750 0.99999000 0.99998750
#> Antelope Creek 0.9999938 0.99999286 0.99999545 0.99999286
#> Battle Creek 0.8691095 0.87623719 0.92424214 0.87623719
#> Bear Creek 0.0000000 0.00000000 0.00000000 0.00000000
#> Big Chico Creek 0.5714245 0.57142449 0.62499609 0.57142449
#> Butte Creek 0.9843443 0.98290588 0.99021999 0.98331585
#> Clear Creek 0.9964787 0.99769308 0.99862631 0.99766616
#> Cottonwood Creek 0.9999875 0.99998750 0.99999000 0.99998750
#> Cow Creek 0.0000000 0.00000000 0.00000000 0.00000000
#> Deer Creek 0.4999992 0.46428489 0.54545372 0.44444362
#> Elder Creek 0.0000000 0.00000000 0.00000000 0.00000000
#> Mill Creek 0.9999978 0.99999750 0.99999857 0.99999750
#> Paynes Creek 0.0000000 0.00000000 0.00000000 0.00000000
#> Stony Creek 0.0000000 0.00000000 0.00000000 0.00000000
#> Thomes Creek 0.9999875 0.99998750 0.99999000 0.99998750
#> Upper-mid Sacramento River 0.0000000 0.00000000 0.00000000 0.00000000
#> Sutter Bypass 0.0000000 0.00000000 0.00000000 0.00000000
#> Bear River 0.0000000 0.00000000 0.00000000 0.00000000
#> Feather River 0.1046093 0.04144179 0.02394504 0.01544249
#> Yuba River 0.2651113 0.20527521 0.24918741 0.18757325
#> Lower-mid Sacramento River 0.0000000 0.00000000 0.00000000 0.00000000
#> Yolo Bypass 0.0000000 0.00000000 0.00000000 0.00000000
#> American River 0.0000000 0.00000000 0.00000000 0.00000000
#> Lower Sacramento River 0.0000000 0.00000000 0.00000000 0.00000000
#> Calaveras River 0.9999875 0.99998750 0.99999000 0.99998750
#> Cosumnes River 0.9999875 0.99998750 0.99999000 0.99998750
#> Mokelumne River 0.9999875 0.99998750 0.99999000 0.99998750
#> Merced River 0.9999875 0.99998750 0.99999000 0.99998750
#> Stanislaus River 0.9999875 0.99998750 0.99999000 0.99998750
#> Tuolumne River 0.9999875 0.99998750 0.99999000 0.99998750
#> San Joaquin River 0.0000000 0.00000000 0.00000000 0.00000000
#> 14 15 16 17 18
#> Upper Sacramento River 0.99995000 0.99998750 0.99999000 0.9999929 0.9999950
#> Antelope Creek 0.99998333 0.99999286 0.99999545 0.9999960 0.9999974
#> Battle Creek 0.69135717 0.86630970 0.91103170 0.9188309 0.9438200
#> Bear Creek 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Big Chico Creek 0.24999688 0.57142449 0.62499609 0.6999965 0.7692278
#> Butte Creek 0.94576239 0.98007460 0.98683119 0.9867658 0.9890260
#> Clear Creek 0.99356881 0.99800389 0.99873811 0.9989664 0.9993855
#> Cottonwood Creek 0.99995000 0.99998750 0.99999000 0.9999929 0.9999950
#> Cow Creek 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Deer Creek 0.21052576 0.46428489 0.55882271 0.6052624 0.6938768
#> Elder Creek 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Mill Creek 0.99999167 0.99999655 0.99999800 0.9999984 0.9999988
#> Paynes Creek 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Stony Creek 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Thomes Creek 0.99995000 0.99998750 0.99999000 0.9999929 0.9999950
#> Upper-mid Sacramento River 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Sutter Bypass 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Bear River 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Feather River 0.01211760 0.02757137 0.04913958 0.1089410 0.1915136
#> Yuba River 0.09765624 0.23509931 0.35414722 0.3931698 0.4851411
#> Lower-mid Sacramento River 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Yolo Bypass 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> American River 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Lower Sacramento River 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> Calaveras River 0.99995000 0.99998750 0.99999000 0.9999929 0.9999950
#> Cosumnes River 0.99995000 0.99998750 0.99999000 0.9999929 0.9999950
#> Mokelumne River 0.99995000 0.99998750 0.99999000 0.9999929 0.9999950
#> Merced River 0.99995000 0.99998750 0.99999000 0.9999929 0.9999950
#> Stanislaus River 0.99995000 0.99998750 0.99999000 0.9999929 0.9999950
#> Tuolumne River 0.99995000 0.99998750 0.99999000 0.9999929 0.9999950
#> San Joaquin River 0.00000000 0.00000000 0.00000000 0.0000000 0.0000000
#> 19 20
#> Upper Sacramento River 0.9999944 0.9999938
#> Antelope Creek 0.9999972 0.9999967
#> Battle Creek 0.9382714 0.9289770
#> Bear Creek 0.0000000 0.0000000
#> Big Chico Creek 0.7499969 0.7272694
#> Butte Creek 0.9848484 0.9720278
#> Clear Creek 0.9993790 0.9992836
#> Cottonwood Creek 0.9999944 0.9999938
#> Cow Creek 0.0000000 0.0000000
#> Deer Creek 0.6590902 0.6341456
#> Elder Creek 0.0000000 0.0000000
#> Mill Creek 0.9999987 0.9999985
#> Paynes Creek 0.0000000 0.0000000
#> Stony Creek 0.0000000 0.0000000
#> Thomes Creek 0.9999944 0.9999938
#> Upper-mid Sacramento River 0.0000000 0.0000000
#> Sutter Bypass 0.0000000 0.0000000
#> Bear River 0.0000000 0.0000000
#> Feather River 0.2188187 0.2252687
#> Yuba River 0.5092068 0.5194174
#> Lower-mid Sacramento River 0.0000000 0.0000000
#> Yolo Bypass 0.0000000 0.0000000
#> American River 0.0000000 0.0000000
#> Lower Sacramento River 0.0000000 0.0000000
#> Calaveras River 0.9999944 0.9999938
#> Cosumnes River 0.9999944 0.9999938
#> Mokelumne River 0.9999944 0.9999938
#> Merced River 0.9999944 0.9999938
#> Stanislaus River 0.9999944 0.9999938
#> Tuolumne River 0.9999944 0.9999938
#> San Joaquin River 0.0000000 0.0000000
#>
#> $viability_metrics
#> [,1] [,2] [,3] [,4]
#> [1,] 0 0 1 0
#> [2,] 0 0 1 0
#> [3,] 0 0 1 0
#> [4,] 0 0 0 0
#> [5,] 0 0 1 0
#> [6,] 0 0 1 0
#> [7,] 0 0 0 0
#> [8,] 0 0 0 0
#> [9,] 0 0 1 0
#> [10,] 0 0 1 0
#> [11,] 0 0 0 0
#> [12,] 1 0 1 0
#> [13,] 0 0 0 0
#> [14,] 0 0 0 0
#> [15,] 0 0 0 0
#> [16,] 0 0 1 0
#> [17,] 0 0 0 0
#> [18,] 1 0 1 0
#> [19,] 1 0 0 0
#>