Get Migratory Survival Rates — get_migratory

Calculates the juvenile out migration survival rates in all regions for a month and year of the simulation

get_migratory_survival(
  year,
  month,
  cc_gates_prop_days_closed,
  freeport_flows,
  vernalis_flows,
  stockton_flows,
  vernalis_temps,
  prisoners_point_temps,
  CVP_exports,
  SWP_exports,
  upper_sacramento_flows,
  delta_inflow,
  avg_temp_delta,
  avg_temp,
  delta_proportion_diverted,
  ..surv_juv_outmigration_sj_int,
  .surv_juv_outmigration_san_joaquin_medium,
  .surv_juv_outmigration_san_joaquin_large,
  min_survival_rate,
  stochastic
)

Source

IP-117068

Arguments

year: The simulation year, 1-20
month: The simulation month, 1-8
cc_gates_prop_days_closed: The number of days and proportion of days the Delta Cross Channel gates are typically closed for each month. More details at delta_cross_channel_closed
freeport_flows: Flow in cms at Freeport (CALSIM node C400). More details at freeport_flow
vernalis_flows: Flow in cms at Vernalis (CALSIM node C639). More details at vernalis_flow
stockton_flows: Flow in cms at Stockton (CALSIM node C417A). More details at stockton_flow
vernalis_temps: Monthly water temperature (°C) at Vernalis from 1980-2000. More details at vernalis_temperature
prisoners_point_temps: Monthly water temperature (°C) at Prisoner's Point from 1980-2000. More details at prisoners_point_temperature
CVP_exports: Total exports for CVP in cms. Value is obtained using CALSIM variable DEL_CVP_EXP. More details at cvp_exports
SWP_exports: Total exports for SWP in cms. Value is obtained using CALSIM variable DEL_SWP_EXP. More details at swp_exports
upper_sacramento_flows: Average monthly flows on the Upper Sacramento River in cubic meters per second, more details at upper_sacramento_flows
delta_inflow: Variable describing delta inflow in cubic meters per second, more details at delta_inflow
avg_temp_delta: Variable describing monthly mean temperature in celsius, more details at delta_temperature
avg_temp: Variable describing monthly mean temperature in celsius, more details at stream_temperature
delta_proportion_diverted: Variable describing diversions from the delta in cubic meters per second, more details at delta_proportion_diverted
..surv_juv_outmigration_sj_int: Intercept for surv_juv_outmigration_san_joaquin
.surv_juv_outmigration_san_joaquin_medium: Size related intercept for surv_juv_outmigration_san_joaquin medium sized fish
.surv_juv_outmigration_san_joaquin_large: Size related intercept for surv_juv_outmigration_san_joaquin large sized fish
min_survival_rate: Estimated survival rate if temperature threshold is exceeded
stochastic: TRUE FALSE value indicating if model is being run stochastically