winter_run_model.RdWinter Run Chinook life cycle model used for CVPIA's Structured Decision Making Process
IP-117068
Model inputs, can be modified to test management actions
The mode to run model in. Can be "seed", "simulate", "calibrate"
The default value is NULL runs the model in seeding mode, returning a 31 by 25 matrix with the first four years of seeded adults. This returned value can be fed into the model again as the value for the seeds argument
Parameters for model and submodels. Defaults to fallRunDSM::.params
TRUE FALSE value indicating if model should be run stochastically. Defaults to FALSE.
winter_run_seeds <- winterRunDSM::winter_run_model(mode = "seed")
winterRunDSM::winter_run_model(scenario = DSMscenario::scenarios$ONE,
mode = "simulate",
seeds = winter_run_seeds)
#> $spawners
#> 1 2 3 4 5 6 7 8 9 10 11
#> Upper Sacramento River 4042 3634 1736 1886 3704 3752 2908 1734 950 660 456
#> Antelope Creek 0 0 0 0 0 0 0 0 0 0 0
#> Battle Creek 3780 3594 1398 702 2474 3554 2330 734 278 156 78
#> Bear Creek 0 0 0 0 0 0 0 0 0 0 0
#> Big Chico Creek 0 0 0 0 0 0 0 0 0 0 0
#> Butte Creek 0 0 0 0 0 0 0 0 0 0 0
#> Clear Creek 0 0 0 0 0 0 0 0 0 0 0
#> Cottonwood Creek 0 0 0 0 0 0 0 0 0 0 0
#> Cow Creek 0 0 0 0 0 0 0 0 0 0 0
#> Deer Creek 0 0 0 0 0 0 0 0 0 0 0
#> Elder Creek 0 0 0 0 0 0 0 0 0 0 0
#> Mill Creek 0 0 0 0 0 0 0 0 0 0 0
#> Paynes Creek 0 0 0 0 0 0 0 0 0 0 0
#> Stony Creek 0 0 0 0 0 0 0 0 0 0 0
#> Thomes Creek 0 0 0 0 0 0 0 0 0 0 0
#> Upper-mid Sacramento River 0 0 0 0 0 0 0 0 0 0 0
#> Sutter Bypass 0 0 0 0 0 0 0 0 0 0 0
#> Bear River 0 0 0 0 0 0 0 0 0 0 0
#> Feather River 0 0 0 0 0 0 0 0 0 0 0
#> Yuba River 0 0 0 0 0 0 0 0 0 0 0
#> Lower-mid Sacramento River 0 0 0 0 0 0 0 0 0 0 0
#> Yolo Bypass 0 0 0 0 0 0 0 0 0 0 0
#> American River 0 0 0 0 0 0 0 0 0 0 0
#> Lower Sacramento River 0 0 0 0 0 0 0 0 0 0 0
#> Calaveras River 0 0 0 0 0 0 0 0 0 0 0
#> Cosumnes River 0 0 0 0 0 0 0 0 0 0 0
#> Mokelumne River 0 0 0 0 0 0 0 0 0 0 0
#> Merced River 0 0 0 0 0 0 0 0 0 0 0
#> Stanislaus River 0 0 0 0 0 0 0 0 0 0 0
#> Tuolumne River 0 0 0 0 0 0 0 0 0 0 0
#> San Joaquin River 0 0 0 0 0 0 0 0 0 0 0
#> 12 13 14 15 16 17 18 19 20
#> Upper Sacramento River 492 422 358 372 384 408 456 616 798
#> Antelope Creek 0 0 0 0 0 0 0 0 0
#> Battle Creek 96 48 4 8 12 6 6 6 8
#> Bear Creek 0 0 0 0 0 0 0 0 0
#> Big Chico Creek 0 0 0 0 0 0 0 0 0
#> Butte Creek 0 0 0 0 0 0 0 0 0
#> Clear Creek 0 0 0 0 0 0 0 0 0
#> Cottonwood Creek 0 0 0 0 0 0 0 0 0
#> Cow Creek 0 0 0 0 0 0 0 0 0
#> Deer Creek 0 0 0 0 0 0 0 0 0
#> Elder Creek 0 0 0 0 0 0 0 0 0
#> Mill Creek 0 0 0 0 0 0 0 0 0
#> Paynes Creek 0 0 0 0 0 0 0 0 0
#> Stony Creek 0 0 0 0 0 0 0 0 0
#> Thomes Creek 0 0 0 0 0 0 0 0 0
#> Upper-mid Sacramento River 0 0 0 0 0 0 0 0 0
#> Sutter Bypass 0 0 0 0 0 0 0 0 0
#> Bear River 0 0 0 0 0 0 0 0 0
#> Feather River 0 0 0 0 0 0 0 0 0
#> Yuba River 0 0 0 0 0 0 0 0 0
#> Lower-mid Sacramento River 0 0 0 0 0 0 0 0 0
#> Yolo Bypass 0 0 0 0 0 0 0 0 0
#> American River 0 0 0 0 0 0 0 0 0
#> Lower Sacramento River 0 0 0 0 0 0 0 0 0
#> Calaveras River 0 0 0 0 0 0 0 0 0
#> Cosumnes River 0 0 0 0 0 0 0 0 0
#> Mokelumne River 0 0 0 0 0 0 0 0 0
#> Merced River 0 0 0 0 0 0 0 0 0
#> Stanislaus River 0 0 0 0 0 0 0 0 0
#> Tuolumne River 0 0 0 0 0 0 0 0 0
#> San Joaquin River 0 0 0 0 0 0 0 0 0
#>
#> $juvenile_biomass
#> 1 2 3 4 5
#> Upper Sacramento River 44772.2 1372119.4 606874.5 770753.0 38567.5
#> Antelope Creek 0.0 0.0 0.0 0.0 0.0
#> Battle Creek 13403.2 420559.7 1000561.2 302350.1 10353.1
#> Bear Creek 0.0 0.0 0.0 0.0 0.0
#> Big Chico Creek 0.0 0.0 0.0 0.0 0.0
#> Butte Creek 0.0 0.0 0.0 0.0 0.0
#> Clear Creek 0.0 0.0 0.0 0.0 0.0
#> Cottonwood Creek 0.0 0.0 0.0 0.0 0.0
#> Cow Creek 0.0 0.0 0.0 0.0 0.0
#> Deer Creek 0.0 0.0 0.0 0.0 0.0
#> Elder Creek 0.0 0.0 0.0 0.0 0.0
#> Mill Creek 0.0 0.0 0.0 0.0 0.0
#> Paynes Creek 0.0 0.0 0.0 0.0 0.0
#> Stony Creek 0.0 0.0 0.0 0.0 0.0
#> Thomes Creek 0.0 0.0 0.0 0.0 0.0
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0
#> Bear River 0.0 0.0 0.0 0.0 0.0
#> Feather River 0.0 0.0 0.0 0.0 0.0
#> Yuba River 0.0 0.0 0.0 0.0 0.0
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0
#> American River 0.0 0.0 0.0 0.0 0.0
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 0.0 0.0 0.0 0.0 0.0
#> Cosumnes River 0.0 0.0 0.0 0.0 0.0
#> Mokelumne River 0.0 0.0 0.0 0.0 0.0
#> Merced River 0.0 0.0 0.0 0.0 0.0
#> Stanislaus River 0.0 0.0 0.0 0.0 0.0
#> Tuolumne River 0.0 0.0 0.0 0.0 0.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0
#> 6 7 8 9 10 11
#> Upper Sacramento River 986378.1 23613.1 16903.1 36266.8 8144.4 1189.1
#> Antelope Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Battle Creek 302543.5 9431.3 10801.5 16000.5 2145.2 354.5
#> Bear Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Big Chico Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Butte Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Clear Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Cottonwood Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Cow Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Deer Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Elder Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Mill Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Paynes Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Stony Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Thomes Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0 0.0
#> Bear River 0.0 0.0 0.0 0.0 0.0 0.0
#> Feather River 0.0 0.0 0.0 0.0 0.0 0.0
#> Yuba River 0.0 0.0 0.0 0.0 0.0 0.0
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0 0.0
#> American River 0.0 0.0 0.0 0.0 0.0 0.0
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 0.0 0.0 0.0 0.0 0.0 0.0
#> Cosumnes River 0.0 0.0 0.0 0.0 0.0 0.0
#> Mokelumne River 0.0 0.0 0.0 0.0 0.0 0.0
#> Merced River 0.0 0.0 0.0 0.0 0.0 0.0
#> Stanislaus River 0.0 0.0 0.0 0.0 0.0 0.0
#> Tuolumne River 0.0 0.0 0.0 0.0 0.0 0.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0 0.0
#> 12 13 14 15 16 17
#> Upper Sacramento River 17132.1 62408.6 3140.9 94414.3 85339.7 190015.5
#> Antelope Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Battle Creek 4100.2 11593.4 31.4 2626.2 2931.1 2763.2
#> Bear Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Big Chico Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Butte Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Clear Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Cottonwood Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Cow Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Deer Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Elder Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Mill Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Paynes Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Stony Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Thomes Creek 0.0 0.0 0.0 0.0 0.0 0.0
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0 0.0
#> Bear River 0.0 0.0 0.0 0.0 0.0 0.0
#> Feather River 0.0 0.0 0.0 0.0 0.0 0.0
#> Yuba River 0.0 0.0 0.0 0.0 0.0 0.0
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0 0.0
#> American River 0.0 0.0 0.0 0.0 0.0 0.0
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 0.0 0.0 0.0 0.0 0.0 0.0
#> Cosumnes River 0.0 0.0 0.0 0.0 0.0 0.0
#> Mokelumne River 0.0 0.0 0.0 0.0 0.0 0.0
#> Merced River 0.0 0.0 0.0 0.0 0.0 0.0
#> Stanislaus River 0.0 0.0 0.0 0.0 0.0 0.0
#> Tuolumne River 0.0 0.0 0.0 0.0 0.0 0.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0 0.0
#> 18 19 20
#> Upper Sacramento River 132858.8 235689.3 223291.3
#> Antelope Creek 0.0 0.0 0.0
#> Battle Creek 1800.7 2292.2 1821.2
#> Bear Creek 0.0 0.0 0.0
#> Big Chico Creek 0.0 0.0 0.0
#> Butte Creek 0.0 0.0 0.0
#> Clear Creek 0.0 0.0 0.0
#> Cottonwood Creek 0.0 0.0 0.0
#> Cow Creek 0.0 0.0 0.0
#> Deer Creek 0.0 0.0 0.0
#> Elder Creek 0.0 0.0 0.0
#> Mill Creek 0.0 0.0 0.0
#> Paynes Creek 0.0 0.0 0.0
#> Stony Creek 0.0 0.0 0.0
#> Thomes Creek 0.0 0.0 0.0
#> Upper-mid Sacramento River 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0
#> Bear River 0.0 0.0 0.0
#> Feather River 0.0 0.0 0.0
#> Yuba River 0.0 0.0 0.0
#> Lower-mid Sacramento River 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0
#> American River 0.0 0.0 0.0
#> Lower Sacramento River 0.0 0.0 0.0
#> Calaveras River 0.0 0.0 0.0
#> Cosumnes River 0.0 0.0 0.0
#> Mokelumne River 0.0 0.0 0.0
#> Merced River 0.0 0.0 0.0
#> Stanislaus River 0.0 0.0 0.0
#> Tuolumne River 0.0 0.0 0.0
#> San Joaquin River 0.0 0.0 0.0
#>
#> $proportion_natural
#> 1 2 3 4 5
#> Upper Sacramento River 0.9148936 0.9053385 0.8018433 0.8176034 0.9071274
#> Antelope Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Battle Creek 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000
#> Bear Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Big Chico Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Butte Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Clear Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Cottonwood Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Cow Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Deer Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Elder Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Mill Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Paynes Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Stony Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Thomes Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Upper-mid Sacramento River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Sutter Bypass 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Bear River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Feather River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Yuba River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Lower-mid Sacramento River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Yolo Bypass 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> American River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Lower Sacramento River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Calaveras River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Cosumnes River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Mokelumne River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Merced River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Stanislaus River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Tuolumne River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> San Joaquin River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> 6 7 8 9 10
#> Upper Sacramento River 0.9083156 0.8817056 0.8016148 0.6378947 0.4787879
#> Antelope Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Battle Creek 1.0000000 1.0000000 1.0000000 1.0000000 1.0000000
#> Bear Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Big Chico Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Butte Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Clear Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Cottonwood Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Cow Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Deer Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Elder Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Mill Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Paynes Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Stony Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Thomes Creek 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Upper-mid Sacramento River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Sutter Bypass 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Bear River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Feather River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Yuba River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Lower-mid Sacramento River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Yolo Bypass 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> American River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Lower Sacramento River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Calaveras River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Cosumnes River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Mokelumne River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Merced River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Stanislaus River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> Tuolumne River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> San Joaquin River 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
#> 11 12 13 14 15
#> Upper Sacramento River 0.245614 0.300813 0.1848341 0.03910615 0.07526882
#> Antelope Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Battle Creek 1.000000 1.000000 1.0000000 1.00000000 1.00000000
#> Bear Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Big Chico Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Butte Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Clear Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Cottonwood Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Cow Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Deer Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Elder Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Mill Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Paynes Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Stony Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Thomes Creek 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Upper-mid Sacramento River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Sutter Bypass 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Bear River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Feather River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Yuba River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Lower-mid Sacramento River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Yolo Bypass 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> American River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Lower Sacramento River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Calaveras River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Cosumnes River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Mokelumne River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Merced River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Stanislaus River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> Tuolumne River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> San Joaquin River 0.000000 0.000000 0.0000000 0.00000000 0.00000000
#> 16 17 18 19 20
#> Upper Sacramento River 0.1041667 0.1568627 0.245614 0.4415584 0.5689223
#> Antelope Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Battle Creek 1.0000000 1.0000000 1.000000 1.0000000 1.0000000
#> Bear Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Big Chico Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Butte Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Clear Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Cottonwood Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Cow Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Deer Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Elder Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Mill Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Paynes Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Stony Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Thomes Creek 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Upper-mid Sacramento River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Sutter Bypass 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Bear River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Feather River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Yuba River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Lower-mid Sacramento River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Yolo Bypass 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> American River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Lower Sacramento River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Calaveras River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Cosumnes River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Mokelumne River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Merced River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Stanislaus River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> Tuolumne River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#> San Joaquin River 0.0000000 0.0000000 0.000000 0.0000000 0.0000000
#>
#> $viability_metrics
#> [,1] [,2] [,3] [,4]
#> [1,] 0 2 0 0
#> [2,] 0 1 0 0
#> [3,] 0 0 0 0
#> [4,] 0 0 0 0
#> [5,] 0 0 0 0
#> [6,] 0 1 0 0
#> [7,] 0 0 0 0
#> [8,] 0 0 0 0
#> [9,] 0 0 0 0
#> [10,] 0 0 0 0
#> [11,] 0 0 0 0
#> [12,] 0 0 0 0
#> [13,] 0 0 0 0
#> [14,] 0 0 0 0
#> [15,] 0 0 0 0
#> [16,] 0 0 0 0
#> [17,] 0 0 0 0
#> [18,] 0 0 0 0
#> [19,] 0 0 0 0
#>