get_rearing_survival.RdCalculates the juvenile inchannel, floodplain, bypasses, and deltas rearing survival rates for a month and year of the simulation
get_rearing_survival(
year,
month,
survival_adjustment,
mode,
avg_temp,
avg_temp_delta,
prob_strand_early,
prob_strand_late,
proportion_diverted,
total_diverted,
delta_proportion_diverted,
delta_total_diverted,
weeks_flooded,
prop_high_predation,
contact_points,
delta_contact_points,
delta_prop_high_predation,
..surv_juv_rear_int,
.surv_juv_rear_contact_points,
..surv_juv_rear_contact_points,
.surv_juv_rear_prop_diversions,
..surv_juv_rear_prop_diversions,
.surv_juv_rear_total_diversions,
..surv_juv_rear_total_diversions,
..surv_juv_bypass_int,
..surv_juv_delta_int,
.surv_juv_delta_contact_points,
..surv_juv_delta_contact_points,
.surv_juv_delta_total_diverted,
..surv_juv_delta_total_diverted,
.surv_juv_rear_avg_temp_thresh,
.surv_juv_rear_high_predation,
.surv_juv_rear_stranded,
.surv_juv_rear_medium,
.surv_juv_rear_large,
.surv_juv_rear_floodplain,
.surv_juv_bypass_avg_temp_thresh,
.surv_juv_bypass_high_predation,
.surv_juv_bypass_medium,
.surv_juv_bypass_large,
.surv_juv_bypass_floodplain,
.surv_juv_delta_avg_temp_thresh,
.surv_juv_delta_high_predation,
.surv_juv_delta_prop_diverted,
.surv_juv_delta_medium,
.surv_juv_delta_large,
min_survival_rate,
stochastic
)IP-117068
The simulation year, 1-20
The simulation month, 1-8
Survival adjustment applied to survival rates based on SIT strategies
The mode that the model is being run in
The 1980-2000 the monthly mean water temperature in °C. More details at stream_temperature
The 1980-2000 rearing temperature in the North and South Delta in °C. More details at delta_temperature
Experts estimated probabilities for predation, stranding, and nest scouring. More details at prob_strand_early
Experts estimated probabilities for predation, stranding, and nest scouring. More details at prob_strand_late
A dataset containing the proportion of flow diverted within watersheds for use with the CVPIA SIT Salmon Population Model. More details at proportion_diverted
A dataset containing the diverted flow in cms within watersheds for use with the CVPIA SIT Salmon Population Model. More details at total_diverted
The proportion of delta inflow diverted from 1980-2000. More details at delta_proportion_diverted
The total diverted of delta inflow in cubic meters per second from 1980-2000.. More details at delta_total_diverted
The 1980-2000 floodplain rearing habitat event duration in number of weeks. More details at weeks_flooded
Experts estimated probabilities for predation, stranding, and nest scouring. More details at prop_high_predation
Number of contact points, estimated using PAD Contact points were derived from the Passage Assessment Database (PAD) maintained by California Department of Fish and Wildlife. Each location considered in the model (e.g., tributary, Sacramento reach, and delta subdivisions) was assessed for all structures identified in the PAD. More details at contact_points
Number of contact points, estimated using PAD Contact points were derived from the Passage Assessment Database (PAD) maintained by California Department of Fish and Wildlife. Each location considered in the model (e.g., tributary, Sacramento reach, and delta subdivisions) was assessed for all structures identified in the PAD. More details at delta_contact_points
Expert estimated high predation probabilities. More details at delta_prop_high_predation
Intercept for surv_juv_rear
Coefficient for surv_juv_rear contact_points variable
Calibrated coefficient for surv_juv_rear contact_points variable
Coefficient for surv_juv_rear prop_diversions variable
Calibrated coefficient for surv_juv_rear prop_diversions variable
Coefficient for surv_juv_rear total_diversions variable
Calibrated coefficient for surv_juv_rear total_diversions variable
Intercept for surv_juv_bypass
Intercept for surv_juv_delta
Coefficient for surv_juv_delta contact_points variable
Calibrated coefficient for surv_juv_delta contact_points variable
Coefficient for surv_juv_delta total_diversions variable
Calibrated coefficient for surv_juv_delta total_diversions variable
Coefficient for surv_juv_rear avg_temp_thresh variable
Coefficient for surv_juv_rear high_predation variable
Coefficient for surv_juv_rear stranded variable
Size related intercept for surv_juv_rear medium sized fish
Size related intercept for surv_juv_rear large sized fish
Additional intercept for surv_juv_rear floodplain rearing benefit
Coefficient for surv_juv_bypass avg_temp_thresh variable
Coefficient for surv_juv_bypass high_predation variable
Size related intercept for surv_juv_bypass medium sized fish
Size related intercept for surv_juv_bypass large sized fish
Additional intercept for surv_juv_bypass floodplain rearing benefit
Coefficient for surv_juv_delta avg_temp_thresh variable
Coefficient for surv_juv_delta high_predation variable
Coefficient for surv_juv_delta prop_diversions variable
Size related intercept for surv_juv_delta medium sized fish
Size related intercept for surv_juv_delta large sized fish
Estimated survival rate if temperature threshold is exceeded
TRUE FALSE value indicating if model is being run stochastically