fall_run_model.RdFall Run Chinook life cycle model used for CVPIA's Structured Decision Making Process
IP-117068
Model inputs, can be modified to test management actions
The mode to run model in. Can be "seed", "simulate", "calibrate"
The default value is NULL runs the model in seeding mode, returning a 31 by 25 matrix with the first four years of seeded adults. This returned value can be fed into the model again as the value for the seeds argument
Parameters for model and submodels. Defaults to fallRunDSM::.params
TRUE FALSE value indicating if model should be run stochastically. Defaults to FALSE.
fall_run_seeds <- fallRunDSM::fall_run_model(mode = "seed")
fallRunDSM::fall_run_model(scenario = DSMscenario::scenarios$ONE,
mode = "simulate",
seeds = fall_run_seeds)
#> $spawners
#> 1 2 3 4 5 6 7
#> Upper Sacramento River 60474 66570 40040 24133 36208 69273 76875
#> Antelope Creek 366 419 304 181 307 674 824
#> Battle Creek 38796 38791 38557 38420 38503 38734 38787
#> Bear Creek 303 328 248 153 303 675 791
#> Big Chico Creek 305 332 251 148 271 588 703
#> Butte Creek 1691 1824 1103 539 931 1781 1741
#> Clear Creek 13377 12802 7110 4375 6064 9831 9519
#> Cottonwood Creek 6770 7042 4752 3184 5740 12067 13050
#> Cow Creek 2711 3180 1964 1097 1493 2572 2784
#> Deer Creek 1245 1389 875 511 795 1461 1563
#> Elder Creek 315 345 272 193 477 1103 1254
#> Mill Creek 1064 1172 718 369 473 791 876
#> Paynes Creek 400 424 298 185 354 773 888
#> Stony Creek 308 332 255 168 403 863 946
#> Thomes Creek 306 331 252 160 376 798 886
#> Upper-mid Sacramento River 0 0 0 0 0 0 0
#> Sutter Bypass 0 0 0 0 0 0 0
#> Bear River 303 334 291 222 385 820 1000
#> Feather River 181389 195180 165617 138793 151085 200527 219340
#> Yuba River 30602 33257 31789 30241 32862 46807 52331
#> Lower-mid Sacramento River 0 0 0 0 0 0 0
#> Yolo Bypass 0 0 0 0 0 0 0
#> American River 30671 31272 30381 29960 30729 33270 33882
#> Lower Sacramento River 0 0 0 0 0 0 0
#> Calaveras River 363 390 508 604 962 2029 2240
#> Cosumnes River 1615 1807 1503 1354 2090 4256 4856
#> Mokelumne River 7882 7914 7838 7771 7904 8329 8437
#> Merced River 3917 4132 4598 4804 4257 4182 4819
#> Stanislaus River 5549 6819 7912 6868 6220 6522 7743
#> Tuolumne River 1590 1753 1872 1751 1583 1719 2035
#> San Joaquin River 0 0 0 0 0 0 0
#> 8 9 10 11 12 13 14
#> Upper Sacramento River 44892 29447 32518 26943 24333 26623 22445
#> Antelope Creek 437 257 263 178 125 143 103
#> Battle Creek 38553 38425 38422 38396 38391 38412 38391
#> Bear Creek 393 218 226 149 100 119 85
#> Big Chico Creek 372 256 285 181 112 136 99
#> Butte Creek 948 894 1117 672 305 350 284
#> Clear Creek 5591 4036 4120 3590 3373 3590 3213
#> Cottonwood Creek 7046 3899 4119 3198 2645 2942 2573
#> Cow Creek 1595 1008 1032 895 813 847 793
#> Deer Creek 864 580 584 454 384 412 361
#> Elder Creek 652 517 664 371 149 197 123
#> Mill Creek 503 341 329 267 235 253 219
#> Paynes Creek 448 264 267 170 118 136 100
#> Stony Creek 527 348 321 203 129 148 98
#> Thomes Creek 493 475 614 347 177 256 155
#> Upper-mid Sacramento River 0 0 0 0 0 0 0
#> Sutter Bypass 0 0 0 0 0 0 0
#> Bear River 570 296 273 172 89 105 78
#> Feather River 178902 142276 136842 135812 136887 137850 133681
#> Yuba River 37282 27234 26914 24758 22684 22550 21821
#> Lower-mid Sacramento River 0 0 0 0 0 0 0
#> Yolo Bypass 0 0 0 0 0 0 0
#> American River 31340 30075 30331 29536 29772 30411 30099
#> Lower Sacramento River 0 0 0 0 0 0 0
#> Calaveras River 1003 898 1416 808 377 577 381
#> Cosumnes River 2822 1781 1816 989 311 273 180
#> Mokelumne River 7963 7643 7575 7557 7545 7555 7541
#> Merced River 4735 4117 3798 3728 3673 3683 3679
#> Stanislaus River 8075 5767 4039 4013 3997 4013 3990
#> Tuolumne River 1919 1579 1390 1363 1347 1364 1341
#> San Joaquin River 0 0 0 0 0 0 0
#> 15 16 17 18 19 20
#> Upper Sacramento River 18503 31256 45630 48531 55869 49002
#> Antelope Creek 74 186 294 358 519 443
#> Battle Creek 38376 38533 38687 38821 38993 38750
#> Bear Creek 64 162 252 312 465 405
#> Big Chico Creek 74 153 226 379 614 473
#> Butte Creek 235 421 599 698 928 782
#> Clear Creek 2880 4395 5973 5907 6320 5574
#> Cottonwood Creek 2235 5286 8324 9078 11466 9364
#> Cow Creek 754 1232 1705 1852 2168 1725
#> Deer Creek 325 538 746 886 1146 926
#> Elder Creek 68 278 477 723 1179 950
#> Mill Creek 195 283 367 439 596 531
#> Paynes Creek 74 183 287 356 522 446
#> Stony Creek 68 186 303 383 609 564
#> Thomes Creek 71 229 375 434 654 603
#> Upper-mid Sacramento River 0 0 0 0 0 0
#> Sutter Bypass 0 0 0 0 0 0
#> Bear River 65 132 193 231 411 466
#> Feather River 132068 141858 148376 141877 153697 168728
#> Yuba River 21328 24080 26510 31224 40635 39577
#> Lower-mid Sacramento River 0 0 0 0 0 0
#> Yolo Bypass 0 0 0 0 0 0
#> American River 30252 30855 30961 31361 32949 32412
#> Lower Sacramento River 0 0 0 0 0 0
#> Calaveras River 144 172 217 298 529 614
#> Cosumnes River 150 201 259 333 487 453
#> Mokelumne River 7535 7571 7601 7604 7656 7701
#> Merced River 3684 3715 3741 3746 3820 4111
#> Stanislaus River 3978 4035 4085 4091 4173 4709
#> Tuolumne River 1329 1386 1436 1442 1524 1616
#> San Joaquin River 0 0 0 0 0 0
#>
#> $juvenile_biomass
#> 1 2 3 4 5
#> Upper Sacramento River 960177.4 405944.6 6509879.2 9343317.7 818996.7
#> Antelope Creek 11353.1 3366.6 33169.3 61325.5 5914.1
#> Battle Creek 24111.1 7639.3 165195.4 202247.4 28605.4
#> Bear Creek 8392.9 2238.5 41448.0 51527.4 5620.6
#> Big Chico Creek 5073.6 2175.7 25748.0 36738.0 5181.0
#> Butte Creek 66092.9 12232.8 528713.2 269788.8 141080.2
#> Clear Creek 234165.1 73186.0 1128880.0 855476.4 141581.7
#> Cottonwood Creek 114714.2 42583.4 1439479.3 1634998.0 273660.1
#> Cow Creek 57723.2 9972.0 215875.0 269914.4 15291.8
#> Deer Creek 60754.9 13264.9 280245.0 318804.2 20284.4
#> Elder Creek 15489.3 6603.1 109711.6 115866.0 31117.4
#> Mill Creek 30562.2 7554.2 72596.8 66756.4 8949.0
#> Paynes Creek 12336.1 3557.3 54981.4 65291.5 7347.6
#> Stony Creek 10129.0 4216.7 83210.0 55672.2 29484.6
#> Thomes Creek 9115.1 3777.1 72596.8 47351.2 29233.4
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0
#> Bear River 32342.0 668.5 93477.8 95393.2 54855.8
#> Feather River 782057.5 644933.7 15878031.6 24949749.2 7080884.3
#> Yuba River 5585316.4 511923.3 11553439.3 15186641.4 4092308.3
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0
#> American River 3626525.2 1441503.7 6542472.1 6667593.4 3395327.5
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 101579.0 785.0 226739.4 259521.0 20661.2
#> Cosumnes River 238043.4 20629.8 571637.0 558135.0 261467.8
#> Mokelumne River 93823.2 219.8 196532.6 183313.2 62172.0
#> Merced River 1033091.4 8164.0 41008.4 487893.2 855493.0
#> Stanislaus River 282725.6 446884.8 391746.4 376705.8 1230597.4
#> Tuolumne River 92849.8 125.6 1036.2 36204.2 132822.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0
#> 6 7 8 9 10
#> Upper Sacramento River 754672.0 2388631.8 586814.9 156104.6 1517990.7
#> Antelope Creek 10642.7 22431.8 4560.7 984.3 8012.3
#> Battle Creek 9428.6 37617.2 5402.6 3391.2 36236.5
#> Bear Creek 6328.2 21414.8 1992.3 408.2 5347.1
#> Big Chico Creek 7558.7 32813.0 1866.7 690.8 6765.1
#> Butte Creek 22895.9 482837.8 4854.7 4310.9 34931.8
#> Clear Creek 85531.4 222236.9 56103.3 17655.4 160979.3
#> Cottonwood Creek 46244.2 417902.6 20325.3 15081.1 163122.5
#> Cow Creek 13935.6 44902.0 4204.4 1130.4 15086.1
#> Deer Creek 29011.1 92096.2 7309.8 2678.1 24730.9
#> Elder Creek 13966.5 120544.6 4305.4 2332.7 21888.5
#> Mill Creek 10750.1 23267.4 4330.9 1161.8 8963.1
#> Paynes Creek 10954.4 25382.1 3408.0 785.0 7193.3
#> Stony Creek 16457.1 35356.4 6449.7 2112.9 10211.8
#> Thomes Creek 11283.0 110967.6 4208.5 2103.8 36330.7
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0
#> Bear River 616.6 48732.8 1002.5 105.1 2260.8
#> Feather River 547342.5 2399405.5 492184.5 1591020.7 2128557.3
#> Yuba River 714809.6 3435636.0 607401.5 392760.3 630279.0
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0
#> American River 1585015.3 4255014.9 1318102.6 1701102.2 3793942.2
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 20064.6 257825.4 17225.4 2920.2 87386.2
#> Cosumnes River 66348.2 335791.6 12443.5 34163.2 17207.2
#> Mokelumne River 282.6 3202.8 62.8 345.4 157.0
#> Merced River 8069.8 92975.4 4647.2 31.4 3202.8
#> Stanislaus River 690.8 1475.8 502.4 0.0 31.4
#> Tuolumne River 31.4 2355.0 31.4 0.0 0.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0
#> 11 12 13 14 15
#> Upper Sacramento River 81540.2 114848.8 134912.9 5622433.7 534098.2
#> Antelope Creek 241.6 251.2 230.7 28647.7 628.4
#> Battle Creek 2135.2 10738.8 5149.6 271637.3 6382.3
#> Bear Creek 157.0 157.0 157.0 20567.0 166.1
#> Big Chico Creek 219.8 219.8 219.8 12277.4 341.3
#> Butte Creek 910.6 1852.6 1413.0 144973.8 880.1
#> Clear Creek 8325.9 19498.2 14847.5 701205.2 38608.6
#> Cottonwood Creek 7293.9 7159.2 9639.8 1432172.2 7786.7
#> Cow Creek 565.2 942.0 659.4 202287.9 996.6
#> Deer Creek 785.0 1036.2 785.0 183887.5 2890.1
#> Elder Creek 480.1 439.6 628.0 73727.2 383.6
#> Mill Creek 314.0 502.4 439.6 26447.9 1298.3
#> Paynes Creek 219.8 251.2 219.8 26501.6 383.6
#> Stony Creek 376.8 345.4 314.0 32404.8 741.3
#> Thomes Creek 1130.4 785.0 1287.4 49141.0 448.7
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0
#> Bear River 31.4 125.6 565.2 8478.0 9.1
#> Feather River 705158.9 30803.4 1637348.9 6115588.2 312910.1
#> Yuba River 267884.3 26344.6 386157.2 3628247.7 238641.3
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0
#> American River 1162623.7 3357376.6 1823199.8 5279973.7 1214558.1
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 13910.2 282.6 1821.2 125.6 31.4
#> Cosumnes River 6123.0 14318.4 1161.8 16390.8 2951.6
#> Mokelumne River 125.6 847.8 94.2 533.8 345.4
#> Merced River 31.4 26313.2 2323.6 7222.0 31.4
#> Stanislaus River 0.0 94.2 0.0 125.6 0.0
#> Tuolumne River 0.0 62.8 0.0 94.2 0.0
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0
#> 16 17 18 19 20
#> Upper Sacramento River 6025042.2 3501327.8 520503.0 6567221.9 1949835.5
#> Antelope Creek 55072.8 12748.4 2532.0 83696.4 7058.1
#> Battle Creek 515136.1 50805.2 12412.1 225189.4 25570.5
#> Bear Creek 46167.1 10330.6 1884.0 63352.0 9142.4
#> Big Chico Creek 81711.9 5589.2 4490.2 38600.6 6410.6
#> Butte Creek 247598.1 67133.2 8509.4 236532.1 159091.5
#> Clear Creek 613740.6 294147.1 33497.5 527329.4 253511.9
#> Cottonwood Creek 1791554.3 753317.4 40201.1 864461.1 240636.8
#> Cow Creek 270192.9 45812.6 9137.4 271261.4 28988.1
#> Deer Creek 334280.3 57085.2 11743.6 361158.7 52929.0
#> Elder Creek 188283.5 65877.2 9429.1 356762.7 26435.6
#> Mill Creek 82474.6 15040.6 2920.2 89589.2 7227.0
#> Paynes Creek 56122.7 13031.0 2386.4 62941.5 9339.9
#> Stony Creek 66765.5 37303.2 3202.8 103822.5 31275.3
#> Thomes Creek 74427.1 42861.0 3265.6 100453.6 25928.2
#> Upper-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Sutter Bypass 0.0 0.0 0.0 0.0 0.0
#> Bear River 29798.6 47319.8 10644.6 106414.6 110377.8
#> Feather River 2861544.8 13644404.0 2020723.3 408294.2 9088007.4
#> Yuba River 10819877.5 7136516.0 2850523.4 9021094.4 7503342.0
#> Lower-mid Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Yolo Bypass 0.0 0.0 0.0 0.0 0.0
#> American River 7092573.7 4773733.8 2199126.3 5486004.5 5091359.1
#> Lower Sacramento River 0.0 0.0 0.0 0.0 0.0
#> Calaveras River 35387.8 31933.8 37868.4 238357.4 9608.4
#> Cosumnes River 44745.0 7096.4 21603.2 177190.2 60391.3
#> Mokelumne River 847.8 1350.2 38904.6 143466.6 111061.8
#> Merced River 8666.4 32844.4 608406.4 407886.0 103714.2
#> Stanislaus River 282.6 251.2 384524.4 910.6 1471561.0
#> Tuolumne River 94.2 816.4 59785.6 910.6 220647.8
#> San Joaquin River 0.0 0.0 0.0 0.0 0.0
#>
#> $proportion_natural
#> 1 2 3 4
#> Upper Sacramento River 0.71759765 0.74345801 0.573476523 0.292338292
#> Antelope Creek 0.87431694 0.89021480 0.848684211 0.745856354
#> Battle Creek 0.01139293 0.01126550 0.005264932 0.001717855
#> Bear Creek 0.87788779 0.88719512 0.850806452 0.758169935
#> Big Chico Creek 0.84918033 0.86144578 0.816733068 0.689189189
#> Butte Creek 0.88054406 0.88925439 0.816863101 0.625231911
#> Clear Creek 0.79823578 0.78917357 0.620393812 0.383085714
#> Cottonwood Creek 0.68360414 0.69582505 0.549242424 0.327261307
#> Cow Creek 0.73404648 0.77327044 0.632892057 0.342752963
#> Deer Creek 0.76385542 0.78833693 0.664000000 0.424657534
#> Elder Creek 0.88253968 0.89275362 0.863970588 0.808290155
#> Mill Creek 0.84304511 0.85750853 0.767409471 0.547425474
#> Paynes Creek 0.88500000 0.89150943 0.845637584 0.751351351
#> Stony Creek 0.87987013 0.88855422 0.854901961 0.779761905
#> Thomes Creek 0.87908497 0.88821752 0.853174603 0.768750000
#> Upper-mid Sacramento River 0.00000000 0.00000000 0.000000000 0.000000000
#> Sutter Bypass 0.00000000 0.00000000 0.000000000 0.000000000
#> Bear River 0.87788779 0.88922156 0.872852234 0.833333333
#> Feather River 0.29075082 0.34086484 0.223207762 0.073080054
#> Yuba River 0.32442324 0.37835644 0.349649250 0.316358586
#> Lower-mid Sacramento River 0.00000000 0.00000000 0.000000000 0.000000000
#> Yolo Bypass 0.00000000 0.00000000 0.000000000 0.000000000
#> American River 0.14671840 0.16311717 0.138573451 0.126468625
#> Lower Sacramento River 0.00000000 0.00000000 0.000000000 0.000000000
#> Calaveras River 0.78512397 0.80000000 0.846456693 0.870860927
#> Cosumnes River 0.97461300 0.97731046 0.972721224 0.969719350
#> Mokelumne River 0.04630804 0.05016427 0.040954325 0.032685626
#> Merced River 0.07224917 0.12052275 0.209656372 0.243547044
#> Stanislaus River 0.28816003 0.42073618 0.500758342 0.424868957
#> Tuolumne River 0.18176101 0.25784370 0.305021368 0.256996002
#> San Joaquin River 0.00000000 0.00000000 0.000000000 0.000000000
#> 5 6 7 8
#> Upper Sacramento River 0.528336279 0.753468162 0.77784715 0.619575871
#> Antelope Creek 0.850162866 0.931750742 0.94417476 0.894736842
#> Battle Creek 0.003869828 0.009810502 0.01116353 0.005161725
#> Bear Creek 0.877887789 0.945185185 0.95322377 0.905852417
#> Big Chico Creek 0.830258303 0.921768707 0.93456615 0.876344086
#> Butte Creek 0.783029001 0.886580573 0.88397473 0.786919831
#> Clear Creek 0.554914248 0.725460279 0.71646181 0.517259882
#> Cottonwood Creek 0.626829268 0.822491091 0.83586207 0.695997729
#> Cow Creek 0.517079705 0.719673406 0.74102011 0.547962382
#> Deer Creek 0.630188679 0.798767967 0.81190019 0.659722222
#> Elder Creek 0.922431866 0.966455122 0.97049442 0.943251534
#> Mill Creek 0.646934461 0.788874842 0.80936073 0.667992048
#> Paynes Creek 0.870056497 0.940491591 0.94819820 0.897321429
#> Stony Creek 0.908188586 0.957126304 0.96088795 0.929791271
#> Thomes Creek 0.901595745 0.953634085 0.95823928 0.924949290
#> Upper-mid Sacramento River 0.000000000 0.000000000 0.00000000 0.000000000
#> Sutter Bypass 0.000000000 0.000000000 0.00000000 0.000000000
#> Bear River 0.903896104 0.954878049 0.96300000 0.935087719
#> Feather River 0.148492570 0.358440509 0.41346768 0.280891214
#> Yuba River 0.370884304 0.558313927 0.60493780 0.445469664
#> Lower-mid Sacramento River 0.000000000 0.000000000 0.00000000 0.000000000
#> Yolo Bypass 0.000000000 0.000000000 0.00000000 0.000000000
#> American River 0.148328940 0.213375413 0.22758397 0.164932993
#> Lower Sacramento River 0.000000000 0.000000000 0.00000000 0.000000000
#> Calaveras River 0.918918919 0.961557417 0.96517857 0.922233300
#> Cosumnes River 0.980382775 0.990366541 0.99155684 0.985471297
#> Mokelumne River 0.048962551 0.097490695 0.10904350 0.056009042
#> Merced River 0.146347193 0.131037781 0.24590164 0.232523759
#> Stanislaus River 0.364951768 0.394357559 0.48986181 0.510835913
#> Tuolumne River 0.178142767 0.243164631 0.36068796 0.322042731
#> San Joaquin River 0.000000000 0.000000000 0.00000000 0.000000000
#> 9 10 11 12
#> Upper Sacramento River 0.420042789 0.474813949 0.366143340 0.2981547692
#> Antelope Creek 0.821011673 0.825095057 0.741573034 0.6320000000
#> Battle Creek 0.001847755 0.001769819 0.001093864 0.0009637675
#> Bear Creek 0.830275229 0.836283186 0.751677852 0.6300000000
#> Big Chico Creek 0.820312500 0.838596491 0.745856354 0.5892857143
#> Butte Creek 0.774049217 0.819158460 0.699404762 0.3377049180
#> Clear Creek 0.331268583 0.344902913 0.248189415 0.1998221168
#> Cottonwood Creek 0.450628366 0.479970867 0.330206379 0.1901701323
#> Cow Creek 0.284722222 0.301356589 0.194413408 0.1131611316
#> Deer Creek 0.493103448 0.496575342 0.352422907 0.2343750000
#> Elder Creek 0.928433269 0.944277108 0.900269542 0.7516778523
#> Mill Creek 0.510263930 0.492401216 0.374531835 0.2893617021
#> Paynes Creek 0.825757576 0.827715356 0.729411765 0.6101694915
#> Stony Creek 0.893678161 0.884735202 0.817733990 0.7131782946
#> Thomes Creek 0.922105263 0.939739414 0.893371758 0.7909604520
#> Upper-mid Sacramento River 0.000000000 0.000000000 0.000000000 0.0000000000
#> Sutter Bypass 0.000000000 0.000000000 0.000000000 0.0000000000
#> Bear River 0.875000000 0.864468864 0.784883721 0.5842696629
#> Feather River 0.095771599 0.059864661 0.052734663 0.0601737199
#> Yuba River 0.240875376 0.231849595 0.164956782 0.0886087110
#> Lower-mid Sacramento River 0.000000000 0.000000000 0.000000000 0.0000000000
#> Yolo Bypass 0.000000000 0.000000000 0.000000000 0.0000000000
#> American River 0.129808811 0.137153407 0.113928765 0.1209525729
#> Lower Sacramento River 0.000000000 0.000000000 0.000000000 0.0000000000
#> Calaveras River 0.913140312 0.944915254 0.903465347 0.7931034483
#> Cosumnes River 0.976979225 0.977422907 0.958543984 0.8681672026
#> Mokelumne River 0.016485673 0.007656766 0.005293106 0.0037110669
#> Merced River 0.117318436 0.043180621 0.025214592 0.0106180234
#> Stanislaus River 0.315068493 0.022035157 0.015698978 0.0117588191
#> Tuolumne River 0.176060798 0.064028777 0.045487894 0.0341499629
#> San Joaquin River 0.000000000 0.000000000 0.000000000 0.0000000000
#> 13 14 15 16
#> Upper Sacramento River 0.358524584 0.2391178436 0.077014538 0.453608907
#> Antelope Creek 0.678321678 0.5533980583 0.378378378 0.752688172
#> Battle Creek 0.001509945 0.0009637675 0.000573275 0.004645369
#> Bear Creek 0.689075630 0.5647058824 0.421875000 0.771604938
#> Big Chico Creek 0.661764706 0.5353535354 0.378378378 0.699346405
#> Butte Creek 0.422857143 0.2887323944 0.140425532 0.520190024
#> Clear Creek 0.248189415 0.1599751012 0.062847222 0.385893060
#> Cottonwood Creek 0.271923861 0.1675087447 0.041610738 0.594778661
#> Cow Creek 0.148760331 0.0907944515 0.043766578 0.414772727
#> Deer Creek 0.286407767 0.1855955679 0.095384615 0.453531599
#> Elder Creek 0.812182741 0.6991869919 0.455882353 0.866906475
#> Mill Creek 0.339920949 0.2374429224 0.143589744 0.409893993
#> Paynes Creek 0.661764706 0.5400000000 0.378378378 0.748633880
#> Stony Creek 0.750000000 0.6224489796 0.455882353 0.801075269
#> Thomes Creek 0.855468750 0.7612903226 0.478873239 0.838427948
#> Upper-mid Sacramento River 0.000000000 0.0000000000 0.000000000 0.000000000
#> Sutter Bypass 0.000000000 0.0000000000 0.000000000 0.000000000
#> Bear River 0.647619048 0.5256410256 0.430769231 0.719696970
#> Feather River 0.066739209 0.0376343684 0.025880607 0.093107192
#> Yuba River 0.083192905 0.0525640438 0.030663916 0.141445183
#> Lower-mid Sacramento River 0.000000000 0.0000000000 0.000000000 0.000000000
#> Yolo Bypass 0.000000000 0.0000000000 0.000000000 0.000000000
#> American River 0.139423235 0.1305026745 0.134900172 0.151806838
#> Lower Sacramento River 0.000000000 0.0000000000 0.000000000 0.000000000
#> Calaveras River 0.864818024 0.7952755906 0.458333333 0.546511628
#> Cosumnes River 0.849816850 0.7722222222 0.726666667 0.796019900
#> Mokelumne River 0.005029782 0.0031826018 0.002388852 0.007132479
#> Merced River 0.013304371 0.0122315847 0.013572204 0.021803499
#> Stanislaus River 0.015698978 0.0100250627 0.007038713 0.021065675
#> Tuolumne River 0.046187683 0.0298284862 0.021068473 0.061327561
#> San Joaquin River 0.000000000 0.0000000000 0.000000000 0.000000000
#> 17 18 19 20
#> Upper Sacramento River 0.625728687 0.64810121 0.69432064 0.65148361
#> Antelope Creek 0.843537415 0.87150838 0.91136802 0.89616253
#> Battle Creek 0.008607543 0.01202957 0.01638756 0.01021935
#> Bear Creek 0.853174603 0.88141026 0.92043011 0.90864198
#> Big Chico Creek 0.796460177 0.87862797 0.92508143 0.90274841
#> Butte Creek 0.662771285 0.71060172 0.78232759 0.74168798
#> Clear Creek 0.548133266 0.54308448 0.57294304 0.51578759
#> Cottonwood Creek 0.742671792 0.76404494 0.81318681 0.77125160
#> Cow Creek 0.577126100 0.61069114 0.66743542 0.58202899
#> Deer Creek 0.605898123 0.66817156 0.74345550 0.68250540
#> Elder Creek 0.922431866 0.94882434 0.96861747 0.96105263
#> Mill Creek 0.544959128 0.61958998 0.71979866 0.68549906
#> Paynes Creek 0.839721254 0.87078652 0.91187739 0.89686099
#> Stony Creek 0.877887789 0.90339426 0.93924466 0.93439716
#> Thomes Creek 0.901333333 0.91474654 0.94342508 0.93864013
#> Upper-mid Sacramento River 0.000000000 0.00000000 0.00000000 0.00000000
#> Sutter Bypass 0.000000000 0.00000000 0.00000000 0.00000000
#> Bear River 0.808290155 0.83982684 0.90997567 0.92060086
#> Feather River 0.132946029 0.09322864 0.16296349 0.23753023
#> Yuba River 0.220143342 0.33788112 0.49122677 0.47762589
#> Lower-mid Sacramento River 0.000000000 0.00000000 0.00000000 0.00000000
#> Yolo Bypass 0.000000000 0.00000000 0.00000000 0.00000000
#> American River 0.154710765 0.16549217 0.20571186 0.19255214
#> Lower Sacramento River 0.000000000 0.00000000 0.00000000 0.00000000
#> Calaveras River 0.640552995 0.73825503 0.85255198 0.87296417
#> Cosumnes River 0.841698842 0.87687688 0.91581109 0.90949227
#> Mokelumne River 0.011051177 0.01144135 0.01815569 0.02389300
#> Merced River 0.028601978 0.02989856 0.04869110 0.11603016
#> Stanislaus River 0.033047736 0.03446590 0.05343877 0.16118072
#> Tuolumne River 0.094011142 0.09778086 0.14632546 0.19492574
#> San Joaquin River 0.000000000 0.00000000 0.00000000 0.00000000
#>
#> $viability_metrics
#> [,1] [,2] [,3] [,4]
#> [1,] 0 0 0 0
#> [2,] 0 0 0 0
#> [3,] 0 0 0 0
#> [4,] 0 0 0 0
#> [5,] 0 0 0 0
#> [6,] 0 0 0 0
#> [7,] 0 0 0 1
#> [8,] 0 0 0 1
#> [9,] 0 0 0 0
#> [10,] 0 0 0 0
#> [11,] 0 0 0 0
#> [12,] 0 0 0 0
#> [13,] 0 0 0 0
#> [14,] 0 0 0 0
#> [15,] 0 0 0 0
#> [16,] 0 0 0 0
#> [17,] 0 0 0 0
#> [18,] 0 0 0 0
#> [19,] 1 0 0 0
#>